#40 fix pip dependency issue with fiona and utils-flask-sqla-geo using python3.8

Dockerfile-back

@@ -1,5 +1,4 @@
-FROM debian:buster-slim
-# todo utiliser image python3 ?
+FROM python:3.8-slim-buster
 
 ## install dependencies
 RUN apt-get update && \
@@ -21,8 +20,7 @@ RUN echo "appuser ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers
 COPY vendor/GeoNature-citizen/ /home/appuser/citizen/
 
 # patches
-#COPY patches/back/requirements.txt /home/appuser/citizen/backend/requirements.txt #use the requirements from the GnC repo
-COPY patches/back/default_config.toml /home/appuser/citizen/config/default_config.toml
+COPY patches/back/default_config.toml /home/appuser/citizen/config/config.toml
 COPY patches/settings.ini /home/appuser/citizen/config/settings.ini
 COPY patches/back/wsgi.py /home/appuser/citizen/backend/wsgi.py
 COPY patches/back/server.py /home/appuser/citizen/backend/server.py
@@ -33,6 +31,8 @@ USER appuser
 
 WORKDIR /home/appuser/citizen/backend/
 
+RUN mkdir /home/appuser/citizen/media/
+
 ENV VIRTUAL_ENV=/home/appuser/citizen/backend/venv2/
 RUN python3 -m venv $VIRTUAL_ENV
 ENV PATH="$VIRTUAL_ENV/bin:$PATH"

README

@@ -1,104 +0,0 @@
-TODO FUSION entre README & README.md
-
-# gl-geonature
-
-L'instance Geonature-Citizen de Champs-Libres.
-
-# Installation développeur (docker-compose )
-
-## Multiple containers
-
-Get the code (using git-submodule) for : citizen & taxhub.
-
-```
- $ git submodule update --init --recursive
-```
-
-### DB init
-
-Creation of the table `referentielsdb` that will be used for storing data.
-
-```
-$ docker-compose up -d db
-$ docker-compose exec db createdb -U postgres referentielsdb
-$ docker-compose exec db psql -U postgres -d referentielsdb -c "CREATE SCHEMA taxonomie"
-$ docker-compose exec db psql -d -U postgres -d referentielsdb -c "CREATE EXTENSION postgis"
-```
-
-### Taxhub
-
-```
-$ docker-compose run taxhub bash install_db.sh
-$ docker-compose up -d taxhub
-```
-
-####  CREATION / Compiation du JS  de Taxhub
-
-##### Mise à jour de nppm.
-
-```
-       $ docker-compose exec -u root taxhub bash
-taxhub $ npm install npm@latest -g  # mise à jour de npm
-```
-
-#### Compilation du code
-
-```
-       $ docker-compose exec taxhub bash
-taxhub $ cd static
-taxhub $ cp app/constants.js.sample app/constants.js
-taxhub $ npm install
-```
-
-
-### Citizen-front
-
-```
-$ docker-compose run --rm citizen-front npm install
-$ docker-compose run --rm citizen-front npm run build:i18n-ssr
-$ docker-compose up -d citizen-front
-```
-
-
-### Citizen-back
-
-
-```
-docker-compose up -d citizen-front
-
-```
-
-### Apache
-
-Redigie de 8080 vers autres services :
-       - 4000 (citizen-front)
-       - 5002 (citizen-back)
-       - 5000 (taxon)
-
-
-
-## Single container (depreciated)
-
-### Creation DB (pour single container)
-
-docker-compose exec db createdb -U postgres citizen
-docker-compose exec db psql -U postgres -d citizen -c "CREATE SCHEMA taxonomie"
-ref_geo
-
-docker-compose exec db psql -d -U postgres -d citizen -c "CREATE EXTENSION postgis"
-
-
- $ git submodule update --init --recursive
- $ docker-compose up -d
- $ docker-compose exec citizen install/install_app.sh
-
-note: les credentials pour accéder au backend se trouvent dans /home/appuser/citizen/config
-
-### Remise en route du service
-
- $ docker-compose up -d
- $ docker-compose exec citizen sh install/restart.sh
-
-# Documentation :
-
- $ make doc

docker-compose.override.yml

@@ -41,13 +41,14 @@ services:
       - ./vendor/GeoNature-citizen/backend/var/log/:/home/appuser/citizen/backend/var/log/
       - ./patches/settings.ini:/home/appuser/citizen/config/settings.ini
       - ./patches/settings.ini:/home/appuser/citizen/backend/config/settings.ini
-      - ./patches/back/default_config.toml:/home/appuser/citizen/config/default_config.toml
+      - ./patches/back/default_config.toml:/home/appuser/citizen/config/config.toml
       - ./patches/back/start_gunicorn.sh:/home/appuser/citizen/backend/start_gunicorn.sh
       - ./patches/back/wsgi.py:/home/appuser/citizen/backend/wsgi.py
       - ./patches/back/server.py:/home/appuser/citizen/backend/server.py
     ports:
       - "5002:5002"
-    command: bash start_gunicorn.sh
+    #command: bash start_gunicorn.sh
+    command: python wsgi.py
   taxhub:
     build:
       dockerfile: ./Dockerfile-taxhub

patches/back/requirements.txt

@@ -1,35 +0,0 @@
-certifi==2019.6.16
-chardet==3.0.4
-Click==7.0
-colorlog==4.0.2
-flasgger==0.9.3
-Flask==1.1.1
-Flask-Admin==1.5.3
-Flask-CKEditor==0.4.3
-Flask-Cors==3.0.8
-Flask-JWT-Extended==3.21.0
-Flask-SQLAlchemy==2.4.0
-GeoAlchemy2==0.6.3
-geojson==2.5.0
-gunicorn==20.0.4
-idna==2.8
-itsdangerous==1.1.0
-Jinja2==2.10.1
-jsonschema==2.6.0
-MarkupSafe==1.1.1
-mistune==0.8.4
-passlib==1.7.1
-psycopg2-binary==2.8.3
-PyJWT==1.7.1
-PyYAML==5.1.2
-requests==2.22.0
-Shapely==1.7.1
-six==1.12.0
-SQLAlchemy==1.3.7
-toml==0.10.0
-urllib3==1.25.3
-Werkzeug==0.15.5
-WTForms==2.2.1
-gunicorn==20.0.4
-httplib2==0.19.0
-xlwt==1.3.0

patches/back/server.py

@@ -96,7 +96,7 @@ def get_app(config, _app=None, with_external_mods=True, url_prefix="/api"):
         from gncitizen.core.users.routes import users_api
         from gncitizen.core.commons.routes import commons_api
         from gncitizen.core.observations.routes import obstax_api
-        from gncitizen.core.ref_geo.routes import geo_api
+        #from gncitizen.core.ref_geo.routes import geo_api
         from gncitizen.core.badges.routes import badges_api
         from gncitizen.core.taxonomy.routes import taxo_api
         from gncitizen.core.sites.routes import sites_api
@@ -104,7 +104,7 @@ def get_app(config, _app=None, with_external_mods=True, url_prefix="/api"):
         app.register_blueprint(users_api, url_prefix=url_prefix)
         app.register_blueprint(commons_api, url_prefix=url_prefix)
         app.register_blueprint(obstax_api, url_prefix=url_prefix)
-        app.register_blueprint(geo_api, url_prefix=url_prefix)
+        #app.register_blueprint(geo_api, url_prefix=url_prefix)
         app.register_blueprint(badges_api, url_prefix=url_prefix)
         app.register_blueprint(taxo_api, url_prefix=url_prefix)
         app.register_blueprint(sites_api, url_prefix=url_prefix + "/sites")

patches/frontend/src/conf/main.config.ts

@@ -0,0 +1,109 @@
+import { AppConfig } from './app.config';
+import { MAP_CONFIG as MapConfig } from './map.config';
+
+export const DefaulConfig = {
+    // Default MainConfig
+    appName: 'GeoNature-citizen',
+    API_ENDPOINT: 'http://localhost:5002/api',
+    API_TAXHUB: 'http://localhost:5000/api',
+    API_CITY: 'https://nominatim.openstreetmap.org/reverse',
+    HCAPTCHA_SITE_KEY: null,
+    FRONTEND: {
+        PROD_MOD: true,
+        MULTILINGUAL: false,
+        DISPLAY_FOOTER: true,
+        DISPLAY_TOPBAR: true,
+        DISPLAY_SIDEBAR: true,
+        DISPLAY_STATS: true,
+        DISPLAY_BADGES: true,
+        NEW_OBS_FORM_MODAL_VERSION: true,
+    },
+    META: {
+        keywords: 'biodiversite enquetes participatif observations',
+    },
+    about: true,
+    URL_APPLICATION: 'http://127.0.0.1:4200',
+    REWARDS: true,
+    termsOfUse: {
+        fr: 'assets/cgu.pdf',
+        en: 'assets/termsOfUse.pdf',
+    },
+    signup: 'optional', // never|optional|always
+    email_contact: false,
+    platform_intro: {
+        fr: 'Bienvenue<br /> sur GeoNature Citizen',
+        en: 'Welcome<br /> on GeoNature Citizen',
+    },
+    platform_teaser: {
+        fr: 'Hae duae provinciae bello quondam piratico catervis mixtae praedonum a Servilio pro consule missae sub iugum factae sunt vectigales. et hae quidem regiones velut in prominenti terrarum lingua positae ob orbe eoo monte Amano disparantur.',
+        en: 'Hae duae provinciae bello quondam piratico catervis mixtae praedonum a Servilio pro consule missae sub iugum factae sunt vectigales. et hae quidem regiones velut in prominenti terrarum lingua positae ob orbe eoo monte Amano disparantur.',
+    },
+    platform_participate: {
+        fr: 'PARTICIPER AU PROGRAMME',
+        en: 'PARTICIPATE',
+    },
+    programs_label: {
+        fr: 'Programmes',
+        en: 'Surveys',
+    },
+    program_label: {
+        fr: 'Le programme',
+        en: 'Survey',
+    },
+    program_share_an_observation: {
+        fr: 'PARTAGER UNE OBSERVATION',
+        en: 'SHARE AN OBSERVATION',
+    },
+    program_add_an_observation: {
+        fr: 'AJOUTER UNE OBSERVATION',
+        en: 'CONTRIBUTE AN OBSERVATION',
+    },
+    program_allow_email_contact: {
+        fr: "J'accepte que mon adresse e-mail puisse être utilisée pour recontacter à propos de mon observation",
+        en: 'I agree that my e-mail address can be used to recontact about my observation',
+    },
+    taxonDisplayImageWhenUnique: true,
+    taxonSelectInputThreshold: 7,
+    taxonAutocompleteInputThreshold: 12,
+    taxonAutocompleteFields: [
+        'nom_complet',
+        'nom_vern',
+        'nom_vern_eng',
+        'cd_nom',
+    ],
+    taxonDisplaySciName: true,
+    program_list_observers_names: true,
+    program_list_sort: '-timestamp_create',
+    details_espece_url: '<url_inpn_or_atlas>/cd_nom/', // !! gardez bien le cd_nom/ dans l'url
+    registration_message: 'Vous inscrire vous permet de gérer vos observations',
+    imageUpload: {
+        maxHeight: 1440,
+        maxWidth: 1440,
+        quality: 0.9,
+    },
+    // Default MapConfig
+    DEFAULT_PROVIDER: 'OpenStreetMapOrg',
+    BASEMAPS: [
+        {
+            name: 'OpenStreetMapOrg',
+            maxZoom: 19,
+            layer: '//{s}.tile.openstreetmap.org/{z}/{x}/{y}.png',
+            subdomains: 'abc',
+            attribution:
+                '&copy; <a href="https://www.openstreetmap.org/copyright">OpenStreetMap</a> contributors, Tiles style by <a href="https://www.hotosm.org/" target="_blank">Humanitarian OpenStreetMap Team</a> hosted by <a href="https://openstreetmap.fr/" target="_blank">OpenStreetMap France</a>',
+        },
+    ],
+    CENTER: [46.52863469527167, 2.43896484375],
+    ZOOM_LEVEL: 6,
+    ZOOM_LEVEL_RELEVE: 15,
+    NEW_OBS_POINTER: 'assets/pointer-blue2.png',
+    OBS_POINTER: 'assets/pointer-green.png',
+    LOCATE_CONTROL_TITLE: {
+        fr: 'Me localiser',
+        en: 'Show me where i am',
+    },
+};
+
+export const MainConfig = { ...DefaulConfig, ...AppConfig, ...MapConfig };
+
+export default MainConfig;