initial commit
This commit is contained in:
Christophe Siraut
commit
f45f5bb274
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@ -0,0 +1,32 @@
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GEONATURE_CITIZEN_TAG = 0.99.1-dev
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.PHONY: start init
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dev: init
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docker image inspect geonature >/dev/null 2>&1 || docker build -f vendor/GeoNature-citizen/Dockerfile -t geonature
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docker container inspect geonature >/dev/null 2>&1 || (\
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docker run -it -d -p 8080:80 --name geonature geonature &&\
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docker cp patches/settings.ini geonature:config/ &&\
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docker cp patches/start.sh geonature:. &&\
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#docker cp patches/install_app.sh geonature:install/ &&\
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#docker cp patches/models.py geonature:backend/gncitizen/core/taxonomy/ &&\
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#docker cp patches/tsconfig.server.json geonature:frontend/src/ &&\
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docker exec -it geonature install/install_app.sh)
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xdg-open http://localhost:8080
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init: vendor/GeoNature-citizen
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git submodule update --init --recursive
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vendor/GeoNature-citizen:
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-mkdir -p vendor
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git submodule add https://github.com/Champs-Libres/GeoNature-citizen.git vendor/GeoNature-citizen
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git commit -m "added submodule GeoNature-citizen"
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#cd $@ && git checkout $(GEONATURE_CITIZEN_TAG)
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doc:
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cd vendor/GeoNature-citizen/docs && make html
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xdg-open $(shell pwd)/vendor/GeoNature-citizen/docs/_build/html/index.html
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clean:
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docker stop geonature
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docker rm geonature
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docker volume prune
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@ -0,0 +1,11 @@
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# gl-geonature
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L'instance Geonature-Citizen de Champs-Libres.
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Installation développeur :
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$ make dev
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Documentation :
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$ make doc
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@ -0,0 +1,253 @@
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#!/bin/bash
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set -ex
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cd $(dirname $(dirname "${BASH_SOURCE[0]:-$0}"))
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DIR=$(pwd)
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#création d'un fichier de configuration pour api/back
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if [ ! -f config/settings.ini ]; then
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echo 'Fichier de configuration du projet non existant, copie du template...'
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cp config/settings.ini.template config/settings.ini
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echo "Fichier de config disponible : $DIR."
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echo "Merci de renseigner le fichier et de relancer la commande install_app.sh."
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exit
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fi
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. config/settings.ini
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#Installation de python / gunicorn / supervisor + dépendances
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sudo apt update && sudo apt -y install python2.7 git gcc curl gunicorn python-setuptools lsb-release apt-transport-https wget
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sudo apt -y install build-essential zlib1g-dev libncurses5-dev libgdbm-dev libnss3-dev libssl-dev libreadline-dev libffi-dev curl libbz2-dev
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sudo apt -y install apache2 python-dev libpq-dev libgeos-dev supervisor unzip virtualenv libcurl4-openssl-dev libssl-dev
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sudo apt -y install libglib2.0-0 libsm6 libxext6 libxrender-dev
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RELEASE=$(cat /etc/os-release | grep VERSION_CODENAME |cut -d "=" -f2)
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sudo apt install python3 python3-dev python3-pip -y
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sudo apt-get clean
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echo `python3 --version`
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|
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sudo service supervisor start && sudo supervisorctl stop all
|
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#Maj de pip
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pip3 install --upgrade pip
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|
||||
#Installation de nvm / npm
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export NVM_DIR="$([ -z "${XDG_CONFIG_HOME-}" ] && printf %s "${HOME}/.nvm" || printf %s "${XDG_CONFIG_HOME}/nvm")"
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curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.37.2/install.sh | bash
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export NVM_DIR="$([ -z "${XDG_CONFIG_HOME-}" ] && printf %s "${HOME}/.nvm" || printf %s "${XDG_CONFIG_HOME}/nvm")"
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[ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh" # This loads nvm
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#cp -r ${HOME}/.nvm /home/synthese/.nvm
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#chown -R synthese:synthese /home/synthese/.nvm
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set +ex
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cd ${DIR}/frontend
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nvm install
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echo `npm -v`
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cd ${DIR}
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set -ex
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#Installation de taxhub
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#if [ ! -d /home/synthese ]; then
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#adduser --gecos "" --home /home/citizen citizen
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#sudo passwd -d citizen
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#adduser citizen sudo
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#adduser citizen root
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#adduser synthese www-data
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#fi
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cd $HOME
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python3 -m pip install virtualenv==20.0.1 --user
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sudo a2enmod rewrite proxy proxy_http
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sudo apache2ctl restart
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sudo apt-get install postgresql postgresql-client postgresql postgresql-postgis -y
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sudo adduser postgres sudo
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sudo service postgresql start
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sudo -n -u postgres psql -c "CREATE ROLE $user_pg WITH PASSWORD '$user_pg_pass';"
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sudo -n -u postgres psql -c "ALTER ROLE $user_pg WITH LOGIN;"
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sudo -n -u postgres createdb -O $user_pg $pg_dbname -T template0 -E UTF-8
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cd $HOME
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if [ ! -d $HOME/taxhub ] && [ $install_taxhub ]; then
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wget https://github.com/PnX-SI/TaxHub/archive/$taxhub_version.zip
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unzip $taxhub_version.zip
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mv TaxHub-$taxhub_version/ taxhub/
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rm ${taxhub_version}.zip
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fi
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cd $HOME/taxhub
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if [ ! -f settings.ini ]; then
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cp settings.ini.sample settings.ini
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fi
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sed -i "s,db_host=.*$,db_host=$pg_host,g" settings.ini
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sed -i "s,db_name=.*$,db_name=$pg_dbname,g" settings.ini
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sed -i "s,user_pg=.*$,user_pg=$user_pg,g" settings.ini
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sed -i "s,user_pg_pass=.*$,user_pg_pass=$user_pg_pass,g" settings.ini
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sed -i "s,db_port=.*$,db_port=$pg_port,g" settings.ini
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sed -i "s,usershub_release=.*$,usershub_release=2.1.3,g" settings.ini
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sudo printf "
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<Location /taxhub> \n
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ProxyPass http://127.0.0.1:5000/ retry=0 \n
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ProxyPassReverse http://127.0.0.1:5000/ \n
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</Location> \n
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\n
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Alias '/static' 'HOME_PATH/taxhub/static' \n
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<Directory 'HOME_PATH/taxhub/static'> \n
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AllowOverride None \n
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Order allow,deny \n
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Allow from all \n
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</Directory> \n
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" | sed "s,HOME_PATH,$HOME,g" | sudo tee /etc/apache2/sites-available/taxhub.conf
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sudo printf '
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RewriteEngine on \n
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RewriteRule "taxhub$" "taxhub/" [R] \n
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' | sudo tee /etc/apache2/sites-available/000-default.conf
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|
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sudo a2ensite taxhub.conf
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sudo apache2ctl restart
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||||
cd $HOME/taxhub
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mkdir -p var/log
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mkdir -p $DIR/var/log
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touch $DIR/var/log/api_geonature-errors.log
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mkdir -p /tmp/taxhub/
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mkdir -p /tmp/usershub/
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sudo chown -R $(whoami) $HOME/taxhub
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sudo chown -R $(whoami) /tmp/taxhub
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||||
sudo chown -R $(whoami) /tmp/usershub
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||||
#sed -i "s,nano.*$,#,g" install_db.sh
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||||
#sed -i "s,PnEcrins,PnX-SI,g" install_db.sh
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||||
sed -i "s,^nano,," install_db.sh
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||||
./install_db.sh
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||||
./install_app.sh
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||||
|
||||
cd $DIR
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||||
. config/settings.ini
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||||
sudo -u postgres psql $pg_dbname -c 'create extension postgis;'
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||||
if [ ! -f config/default_config.toml ]; then
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||||
echo 'Fichier de configuration API non existant, copie du template...'
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||||
cp config/default_config.toml.template config/default_config.toml
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||||
sed -i "s/SQLALCHEMY_DATABASE_URI = .*$/SQLALCHEMY_DATABASE_URI = \"postgresql:\/\/$user_pg:$user_pg_pass@$pg_host:$pg_port\/$pg_dbname\"/" config/default_config.toml
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||||
sed -i "s,URL_APPLICATION = .*$,URL_APPLICATION = \"$url_application\",g" config/default_config.toml
|
||||
sed -i "s,API_ENDPOINT = .*$,API_ENDPOINT = \"$api_endpoint\",g" config/default_config.toml
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||||
sed -i "s,API_PORT = .*$,API_PORT = \"$api_port\",g" config/default_config.toml
|
||||
sed -i "s,API_TAXHUB = .*$,API_TAXHUB = \"$api_taxhub\",g" config/default_config.toml
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||||
fi
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||||
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||||
sudo -u postgres psql -c 'CREATE SCHEMA taxonomie AUTHORIZATION dbuser' dbname
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||||
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||||
#Création d'un fichier de configuration pour le front
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cd frontend
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if [ ! -f src/conf/app.config.ts ]; then
|
||||
echo 'Fichier de configuration frontend non existant, copie du template...'
|
||||
cp src/conf/app.config.ts.template src/conf/app.config.ts
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||||
sed -i "s|API_ENDPOINT:.*$|API_ENDPOINT:\"$api_endpoint\",|g" src/conf/app.config.ts
|
||||
sed -i "s|API_TAXHUB:.*$|API_TAXHUB:\"$api_taxhub\",|g" src/conf/app.config.ts
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||||
sed -i "s|URL_APPLICATION:.*$|URL_APPLICATION:\"$url_application\",|g" src/conf/app.config.ts
|
||||
|
||||
fi
|
||||
if [ ! -f src/conf/map.config.ts ]; then
|
||||
echo 'Fichier map non existant, copie du template...'
|
||||
cp src/conf/map.config.ts.template src/conf/map.config.ts
|
||||
fi
|
||||
|
||||
#Copie des fichiers custom
|
||||
if [ ! -f src/custom/custom.css ]; then
|
||||
echo 'Fichier custom.css non existant, copie du template...'
|
||||
cp src/custom/custom.css.template src/custom/custom.css
|
||||
fi
|
||||
if [ ! -f src/custom/about/about.css ]; then
|
||||
echo 'Fichiers about non existant, copie du template...'
|
||||
cp src/custom/about/about.css.template src/custom/about/about.css
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||||
cp src/custom/about/about.html.template src/custom/about/about.html
|
||||
fi
|
||||
if [ ! -f src/custom/footer/footer.css ]; then
|
||||
echo 'Fichiers footer non existant, copie du template...'
|
||||
cp src/custom/footer/footer.css.template src/custom/footer/footer.css
|
||||
cp src/custom/footer/footer.html.template src/custom/footer/footer.html
|
||||
fi
|
||||
if [ ! -f src/custom/home/home.css ]; then
|
||||
echo 'Fichiers footer non existant, copie du template...'
|
||||
cp src/custom/home/home.css.template src/custom/home/home.css
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||||
cp src/custom/home/home.html.template src/custom/home/home.html
|
||||
fi
|
||||
|
||||
#Install and build
|
||||
export NG_CLI_ANALYTICS=ci # Désactive le prompt pour angular metrics
|
||||
URL=`echo $my_url |sed 's/[^/]*\/\/\([^@]*@\)\?\([^:/]*\).*/\2/'`
|
||||
echo "L'application sera disponible à l'url $my_url"
|
||||
|
||||
nvm use
|
||||
npm install
|
||||
|
||||
# Installation de la conf
|
||||
sudo cp ../install/supervisor/gncitizen_frontssr-service.conf /etc/supervisor/conf.d/
|
||||
sudo sed -i "s%APP_PATH%${DIR}%" /etc/supervisor/conf.d/gncitizen_frontssr-service.conf
|
||||
sudo sed -i "s%SYSUSER%$(whoami)%" /etc/supervisor/conf.d/gncitizen_frontssr-service.conf
|
||||
sudo cp ../install/apache/gncitizen.conf /etc/apache2/sites-available/gncitizen.conf
|
||||
if [ ${backoffice_password:=MotDePasseAChanger} = MotDePasseAChanger ]; then
|
||||
backoffice_password=$(date +%s | sha256sum | base64 | head -c 30 ; echo)
|
||||
fi
|
||||
echo "Backoffice password
|
||||
===================
|
||||
url: (${URL}/api/admin)
|
||||
username: ${backoffice_username:=citizen}
|
||||
password: ${backoffice_password}" > ${DIR}/config/backoffice_access
|
||||
htpasswd -b -c ${DIR}/config/backoffice_htpasswd ${backoffice_username} ${backoffice_password}
|
||||
sudo sed -i "s%APP_PATH%${DIR}%" /etc/apache2/sites-available/gncitizen.conf
|
||||
sudo sed -i "s%mydomain.net%${URL}%" /etc/apache2/sites-available/gncitizen.conf
|
||||
sudo sed -i "s%backoffice_username%${backoffice_username}%" /etc/apache2/sites-available/gncitizen.conf
|
||||
|
||||
if [ $server_side = "true" ]; then
|
||||
echo "Build server side project"
|
||||
npm run build:i18n-ssr
|
||||
else
|
||||
echo "Build initial du projet"
|
||||
npm run build
|
||||
fi
|
||||
cd ..
|
||||
|
||||
# Création du venv
|
||||
venv_path=$DIR/backend/${venv_dir:-"venv"}
|
||||
if [ ! -f $venv_path/bin/activate ]; then
|
||||
python3 -m virtualenv $venv_path
|
||||
fi
|
||||
source $venv_path/bin/activate
|
||||
pip install --upgrade pip
|
||||
pip install -r backend/requirements.txt
|
||||
deactivate
|
||||
|
||||
# Copy main medias to media
|
||||
mkdir -p $DIR/media
|
||||
cp -r $DIR/frontend/src/assets/* $DIR/media
|
||||
|
||||
touch init_done
|
||||
|
||||
#Création de la conf supervisor
|
||||
sudo cp install/supervisor/gncitizen_api-service.conf /etc/supervisor/conf.d/
|
||||
sudo sed -i "s%APP_PATH%${DIR}%" /etc/supervisor/conf.d/gncitizen_api-service.conf
|
||||
sudo sed -i "s%SYSUSER%$(whoami)%" /etc/supervisor/conf.d/gncitizen_api-service.conf
|
||||
|
||||
# Prise en compte de la nouvelle config Apache
|
||||
sudo a2ensite gncitizen.conf
|
||||
sudo apache2ctl restart
|
||||
|
||||
# Prise en compte de la nouvelle config Supervisor
|
||||
sudo supervisorctl reread
|
||||
sudo supervisorctl reload
|
||||
|
||||
echo "install municipalities"
|
||||
./data/ref_geo.sh
|
||||
|
||||
echo "End of installation
|
||||
You can now access to GeoNature-citizen at ${my_url}
|
||||
|
||||
Backoffice access informations are stored in ${DIR}/config/backoffice_access as follows:
|
||||
"
|
||||
|
||||
cat ${DIR}/config/backoffice_access
|
||||
|
|
@ -0,0 +1,118 @@
|
|||
from sqlalchemy import ForeignKey
|
||||
|
||||
from gncitizen.utils.sqlalchemy import serializable
|
||||
from server import db
|
||||
|
||||
|
||||
@serializable
|
||||
class BibNoms(db.Model):
|
||||
__tablename__ = "bib_noms"
|
||||
__table_args__ = {"schema": "taxonomie", "extend_existing": True}
|
||||
id_nom = db.Column(db.Integer, primary_key=True)
|
||||
cd_nom = db.Column(db.Integer, nullable=True, unique=True)
|
||||
cd_ref = db.Column(db.Integer, unique=True)
|
||||
nom_francais = db.Column(db.Unicode)
|
||||
comments = db.Column(db.Unicode)
|
||||
|
||||
|
||||
@serializable
|
||||
class BibListes(db.Model):
|
||||
__tablename__ = "bib_listes"
|
||||
__table_args__ = {"schema": "taxonomie", "extend_existing": True}
|
||||
id_liste = db.Column(db.Integer, primary_key=True)
|
||||
nom_liste = db.Column(db.Unicode)
|
||||
desc_liste = db.Column(db.Text)
|
||||
picto = db.Column(db.Unicode)
|
||||
regne = db.Column(db.Unicode)
|
||||
group2_inpn = db.Column(db.Unicode)
|
||||
|
||||
# cnl = db.relationship("CorNomListe", lazy='select')
|
||||
|
||||
def __repr__(self):
|
||||
return "<BibListes %r>" % self.nom_liste
|
||||
|
||||
|
||||
@serializable
|
||||
class CorNomListe(db.Model):
|
||||
__tablename__ = "cor_nom_liste"
|
||||
__table_args__ = {"schema": "taxonomie", "extend_existing": True}
|
||||
id_liste = db.Column(
|
||||
db.Integer,
|
||||
ForeignKey("taxonomie.bib_listes.id_liste"),
|
||||
nullable=False,
|
||||
primary_key=True,
|
||||
)
|
||||
id_nom = db.Column(
|
||||
db.Integer,
|
||||
ForeignKey("taxonomie.bib_noms.id_nom"),
|
||||
nullable=False,
|
||||
primary_key=True,
|
||||
)
|
||||
bib_nom = db.relationship("BibNoms")
|
||||
bib_liste = db.relationship("BibListes")
|
||||
|
||||
def __repr__(self):
|
||||
return "<CorNomListe %r>" % self.id_liste
|
||||
|
||||
# listes = db.relationship("CorNomListe", lazy='select')
|
||||
# medias = db.relationship("TMedias", lazy='select')
|
||||
#
|
||||
|
||||
|
||||
@serializable
|
||||
class TMedias(db.Model):
|
||||
__tablename__ = "t_medias"
|
||||
__table_args__ = {"schema": "taxonomie", "extend_existing": True}
|
||||
id_media = db.Column(db.Integer, primary_key=True)
|
||||
cd_ref = db.Column(
|
||||
db.Integer,
|
||||
ForeignKey("taxonomie.bib_noms.cd_ref"),
|
||||
nullable=False,
|
||||
primary_key=False,
|
||||
)
|
||||
titre = db.Column(db.Unicode)
|
||||
url = db.Column(db.Unicode)
|
||||
chemin = db.Column(db.Unicode)
|
||||
auteur = db.Column(db.Unicode)
|
||||
desc_media = db.Column(db.Text)
|
||||
is_public = db.Column(db.BOOLEAN)
|
||||
supprime = db.Column(db.BOOLEAN)
|
||||
id_type = db.Column(db.Integer)
|
||||
source = db.Column(db.Text)
|
||||
licence = db.Column(db.Text)
|
||||
|
||||
def __repr__(self):
|
||||
return "<TMedias %r>" % self.titre
|
||||
|
||||
|
||||
@serializable
|
||||
class Taxref(db.Model):
|
||||
__tablename__ = "taxref"
|
||||
__table_args__ = {"schema": "taxonomie"}
|
||||
cd_nom = db.Column(db.Integer, primary_key=True)
|
||||
id_statut = db.Column(db.Unicode)
|
||||
id_habitat = db.Column(db.Integer)
|
||||
id_rang = db.Column(db.Unicode)
|
||||
regne = db.Column(db.Unicode)
|
||||
phylum = db.Column(db.Unicode)
|
||||
classe = db.Column(db.Unicode)
|
||||
ordre = db.Column(db.Unicode)
|
||||
famille = db.Column(db.Unicode)
|
||||
sous_famille = db.Column(db.Unicode)
|
||||
tribu = db.Column(db.Unicode)
|
||||
cd_taxsup = db.Column(db.Integer)
|
||||
cd_sup = db.Column(db.Integer)
|
||||
cd_ref = db.Column(db.Integer)
|
||||
lb_nom = db.Column(db.Unicode)
|
||||
lb_auteur = db.Column(db.Unicode)
|
||||
nom_complet = db.Column(db.Unicode)
|
||||
nom_complet_html = db.Column(db.Unicode)
|
||||
nom_vern = db.Column(db.Unicode)
|
||||
nom_valide = db.Column(db.Unicode)
|
||||
nom_vern_eng = db.Column(db.Unicode)
|
||||
group1_inpn = db.Column(db.Unicode)
|
||||
group2_inpn = db.Column(db.Unicode)
|
||||
url = db.Column(db.Unicode)
|
||||
|
||||
def __repr__(self):
|
||||
return "<Taxref %r>" % self.nom_complet
|
||||
|
|
@ -0,0 +1,48 @@
|
|||
# Langue du serveur
|
||||
# valeur possible : fr_FR.UTF-8, en_US.utf8
|
||||
# locale -a pour voir la liste des locales disponible
|
||||
my_local=fr_FR.UTF-8
|
||||
|
||||
# My host URL or IP with / at the end
|
||||
my_url=http://localhost:8080/
|
||||
|
||||
url_application=http://localhost:8080/ # Url For the frontend
|
||||
api_endpoint=http://localhost:8080/api # Url for the geonature api don't forget /api
|
||||
api_port=5002
|
||||
api_taxhub=http://localhost/taxhub/api/ # Url for the taxhub api
|
||||
|
||||
install_taxhub=1
|
||||
taxhub_version=1.7.3
|
||||
|
||||
# Configuration front
|
||||
server_side=true # Server side rendering heavy recommanded
|
||||
|
||||
# BackOffice admin passsword
|
||||
admin_password=MotDePasseAChanger
|
||||
|
||||
################################
|
||||
### CONFIGURATION PostgreSQL ###
|
||||
################################
|
||||
|
||||
|
||||
# Localisation du server PostgreSQL.
|
||||
# Les scripts d'installation automatique ne fonctionnent que si votre BDD est sur le même serveur (localhost)
|
||||
pg_host=localhost
|
||||
# Port sur lequel PostgreSQL ecoute
|
||||
pg_port=5432
|
||||
#Base de donnée Geonature
|
||||
pg_dbname=dbname
|
||||
# Nom de l'utilisateur propriétaire des bases UsersHub, GeoNature, TaxHub
|
||||
user_pg=dbuser
|
||||
# Pass de l'utilisateur propriétaire des bases UsersHub, GeoNature, TaxHub
|
||||
user_pg_pass=dbpwd
|
||||
|
||||
#########################
|
||||
### Gunicorn settings ###
|
||||
#########################
|
||||
|
||||
app_name=gncitizen
|
||||
gun_num_workers=2
|
||||
gun_host=localhost
|
||||
gun_port=5002
|
||||
gun_timeout=30
|
||||
|
|
@ -0,0 +1,7 @@
|
|||
#!/bin/sh
|
||||
set -e
|
||||
|
||||
sudo /etc/init.d/postgresql start
|
||||
sudo /etc/init.d/apache2 start
|
||||
test -f /var/run/supervisor.* && sudo rm /var/run/supervisor.*
|
||||
sudo /etc/init.d/supervisor start
|
||||
|
|
@ -0,0 +1,11 @@
|
|||
{
|
||||
"extends": "./tsconfig.app.json",
|
||||
"compilerOptions": {
|
||||
"outDir": "../out-tsc/app-server",
|
||||
"baseUrl": ".",
|
||||
"module": "commonjs"
|
||||
},
|
||||
"angularCompilerOptions": {
|
||||
"entryModule": "app/app.server.module#AppServerModule"
|
||||
}
|
||||
}
|
||||
Loading…
Reference in New Issue